Gene editing outcome interpreter

CRISPR REP-AI-R Analysis Studio

Predict intended alleles, common byproducts, and infer repair pathways from observed sequencing reads across nuclease, HDR, base-editing, and prime-editing workflows.

Design Inputs

Paste target, guide, editor-specific templates, and optional reads.

Example preset

Editing tool

Experimental organism

Repair-mutant backgrounds

Canonical NHEJ deficientLIG4, XRCC4, XRCC5/6, PRKDCTMEJ / POLQ deficientPOLQHomologous recombination deficientBRCA1/2, PALB2, RAD51SSA / RAD52 deficientRAD52End resection deficientMRE11/RAD50/NBN, RBBP8/CtIP53BP1 / Shieldin end protection deficientTP53BP1, SHLD1/2/3, REV7, CSTFanconi anemia pathway deficientFANCA, FANCD2, FANCI and related factorsMismatch repair deficientMLH1, PMS2, MSH2, MSH6

Desired repair classDesired full product sequence

Target DNAGuide / spacerObserved sequencing reads

No analysis run

Waiting for input.